Transcript: lnc-CDH13-1:1

Basic information

LNCipedia transcript ID: lnc-CDH13-1:1 
LNCipedia gene ID: lnc-CDH13-1
Location (hg38): chr16:83797661-83800640
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2980 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567109.1; RP11-483P21.3-001; OTTHUMT00000432948.1; NONHSAT144013
Alternative gene names: ENSG00000260523.1; RP11-483P21.3; OTTHUMG00000176644.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9959 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH13-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH13-1:1
4.0 lnc-CDH13-1:1
4.1 lnc-CDH13-1:1
5.0 lnc-CDH13-1:1
5.1 lnc-CRISPLD2-41:1
5.2 lnc-CDH13-1:1