Transcript: lnc-CDH22-1:1

Basic information

LNCipedia transcript ID: lnc-CDH22-1:1 
LNCipedia gene ID: lnc-CDH22-1
Ensembl Gene ID: ENSG00000229957
Ensembl Transcript ID: ENST00000450586
Location (hg38): chr20:46168404-46171237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2137 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028055; ENST00000450586; ENST00000450586.1; RP5-998H6.2-001; OTTHUMT00000079565.1; NONHSAT080007
Alternative gene names: XLOC_013765; linc-NCOA5-2; ENSG00000229957; RP5-998H6.2; ENSG00000229957.1; OTTHUMG00000032644.1; AL031687.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.0569 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH22-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH22-1:1
3.1 lnc-CDH22-1:1
4.0 lnc-CDH22-1:1
4.1 lnc-CDH22-1:1
5.0 lnc-CDH22-1:1
5.1 lnc-MATN4-30:1
5.2 lnc-CDH22-1:1