Transcript: lnc-CDH23-3:1

Basic information

LNCipedia transcript ID: lnc-CDH23-3:1 
LNCipedia gene ID: lnc-CDH23-3
Ensembl Gene ID: ENSG00000230526
Ensembl Transcript ID: ENST00000441348
Location (hg38): chr10:71878356-71879107
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017841; ENST00000441348; ENST00000441348.1; RP11-472G21.2-001; OTTHUMT00000048552.1; NONHSAT013905
Alternative gene names: XLOC_008512; linc-CHST3-1; ENSG00000230526; RP11-472G21.2; ENSG00000230526.1; OTTHUMG00000018428.1; AC073370.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.1314 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH23-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH23-1:1
3.1 lnc-CDH23-1:1
4.0 lnc-CDH23-1:1
4.1 lnc-CDH23-1:1
5.0 lnc-CDH23-1:1
5.1 lnc-MTRNR2L5-137:1
5.2 lnc-CDH23-3:1