Transcript: lnc-CDH8-10:2

Basic information

LNCipedia transcript ID: lnc-CDH8-10:2 
LNCipedia gene ID: lnc-CDH8-10
Ensembl Gene ID: ENSG00000260658
Ensembl Transcript ID: ENST00000564290
Location (hg38): chr16:63531088-63618046
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564290.1; RP11-368L12.1-002; OTTHUMT00000432043.2; NONHSAT142944
Alternative gene names: ENSG00000260658.1; RP11-368L12.1; OTTHUMG00000176432.3; ENSG00000260658.5; AC138305.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.2579 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH8-10:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH11-6:2
4.0 lnc-CDH8-10:2
4.1 lnc-CDH8-10:2
5.0 lnc-CDH8-10:2
5.1 lnc-PSMB10-57:2
5.2 lnc-CDH8-10:2