Transcript: lnc-CDH8-3:3

Basic information

LNCipedia transcript ID: lnc-CDH8-3:3 
LNCipedia gene ID: lnc-CDH8-3
Ensembl Gene ID: ENSG00000261310
Ensembl Transcript ID: ENST00000567862
Location (hg38): chr16:60486819-60523250
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567862.1; RP11-354I13.1-001; OTTHUMT00000422121.1; NONHSAT142903
Alternative gene names: ENSG00000261310.1; RP11-354I13.1; OTTHUMG00000173089.1; AC009081.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.5723 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH8-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-105C20.2.1-3:1
4.0 lnc-RP11-105C20.2.1-3:1
4.1 lnc-RP11-105C20.2.1-3:1
5.0 lnc-RP11-105C20.2.1-3:1
5.1 lnc-CFAP20-67:1
5.2 lnc-CDH8-3:3