Transcript: lnc-CDIPT-1:7

Basic information

LNCipedia transcript ID: lnc-CDIPT-1:7 
LNCipedia gene ID: lnc-CDIPT-1
Ensembl Gene ID: ENSG00000238045
Ensembl Transcript ID: ENST00000563806
Location (hg38): chr16:29808649-29809707
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563806.1; AC009133.14-002; OTTHUMT00000435557.1; NONHSAT141640
Alternative gene names: ENSG00000238045.4; AC009133.14; OTTHUMG00000177641.1; ENSG00000238045.5; ENSG00000238045.9; AC009133.12; AC009133.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.0239 non-coding 
CPAT coding probability 18.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDIPT-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDIPT-1:7
4.0 lnc-CDIPT-1:7
4.1 lnc-CDIPT-1:7
5.0 lnc-CDIPT-1:7
5.1 lnc-SULT1A2-48:11
5.2 lnc-CDIPT-1:7