Transcript: lnc-CDIPT-2:1

Basic information

LNCipedia transcript ID: lnc-CDIPT-2:1 
LNCipedia gene ID: lnc-CDIPT-2
Ensembl Gene ID: ENSG00000259952
Ensembl Transcript ID: ENST00000566537
Location (hg38): chr16:29806496-29807732
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566537.1; AC009133.15-001; OTTHUMT00000435555.1; NONHSAT141630
Alternative gene names: ENSG00000259952.1; AC009133.15; OTTHUMG00000177140.1; AC009133.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 223.7768 coding 
CPAT coding probability 94.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDIPT-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDIPT-2:1
4.0 lnc-CDIPT-2:1
4.1 lnc-CDIPT-2:1
5.0 lnc-CDIPT-2:1
5.1 lnc-SULT1A2-46:1
5.2 lnc-CDIPT-2:1