Transcript: lnc-CDK12-1:2

Basic information

LNCipedia transcript ID: lnc-CDK12-1:2 
LNCipedia gene ID: lnc-CDK12-1
Location (hg38): chr17:39550990-39567546
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1040 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025375; NONHSAT053452
Alternative gene names: XLOC_012192; linc-PPP1R1B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5366 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK12-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK12-1:2
3.1 lnc-CDK12-1:2
4.0 lnc-CDK12-1:2
4.1 lnc-CDK12-1:2
5.0 lnc-CDK12-1:2
5.1 lnc-RPL19-12:7
5.2 lnc-CDK12-1:2