Transcript: lnc-CDK13-2:1

Basic information

LNCipedia transcript ID: lnc-CDK13-2:1 
LNCipedia gene ID: lnc-CDK13-2
Ensembl Gene ID: ENSG00000227658
Ensembl Transcript ID: ENST00000432405
Location (hg38): chr7:40775558-40785217
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 381 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432405.1; AC005160.3-001; OTTHUMT00000338387.1; NONHSAT120252
Alternative gene names: ENSG00000227658.1; AC005160.3; OTTHUMG00000155093.1; AC005160.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK13-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK13-2:1
4.0 lnc-CDK13-2:1
4.1 lnc-CDK13-2:1
5.0 lnc-CDK13-2:1
5.1 lnc-CCDC129-94:1
5.2 lnc-CDK13-2:1