Transcript: lnc-CDK20-3:1

Basic information

LNCipedia transcript ID: lnc-CDK20-3:1 
LNCipedia gene ID: lnc-CDK20-3
Ensembl Gene ID: ENSG00000233884
Ensembl Transcript ID: ENST00000411992
Location (hg38): chr9:87848113-87853442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 981 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015840; ENST00000411992.1; XXyac-YM21GA2.3-001; OTTHUMT00000052952.1; NONHSAT132877
Alternative gene names: XLOC_007760; linc-GAS1-1; ENSG00000233884.1; XXyac-YM21GA2.3; OTTHUMG00000020155.1; AL772337.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8652 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK20-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK20-2:1
3.1 lnc-CDK20-3:1
4.0 lnc-CDK20-3:1
4.1 lnc-CDK20-3:1
5.0 lnc-CDK20-3:1
5.1 lnc-SEMA4D-42:1
5.2 lnc-CDK20-3:1