Transcript: lnc-CDK5RAP1-1:1

Basic information

LNCipedia transcript ID: lnc-CDK5RAP1-1:1 
LNCipedia gene ID: lnc-CDK5RAP1-1
Ensembl Gene ID: ENSG00000224876
Ensembl Transcript ID: ENST00000419613
Location (hg38): chr20:33214920-33217067
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 366 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028036; ENST00000419613.1; RP11-49G10.3-001; OTTHUMT00000078676.1; NONHSAT079384
Alternative gene names: XLOC_013723; linc-SUN5-1; ENSG00000224876.1; RP11-49G10.3; OTTHUMG00000032248.1; AL121901.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.0286 non-coding 
CPAT coding probability 5.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK5RAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK5RAP1-1:1
3.1 lnc-CDK5RAP1-1:1
4.0 lnc-CDK5RAP1-1:1
4.1 lnc-CDK5RAP1-1:1
5.0 lnc-CDK5RAP1-1:1
5.1 lnc-MMP24OS-43:1
5.2 lnc-CDK5RAP1-1:1