Transcript: lnc-CDKL1-1:1

Basic information

LNCipedia transcript ID: lnc-CDKL1-1:1 
LNCipedia gene ID: lnc-CDKL1-1
Ensembl Gene ID: ENSG00000259071
Ensembl Transcript ID: ENST00000555403
Location (hg38): chr14:50326526-50327909
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 446 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555403; ENST00000555403.1; RP11-247L20.4-001; OTTHUMT00000410877.1; NONHSAT036788
Alternative gene names: ENSG00000259071; RP11-247L20.4; ENSG00000259071.1; OTTHUMG00000170886.1; AL359397.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0344 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDKL1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDKL1-1:1
3.1 lnc-CDKL1-1:1
4.0 lnc-CDKL1-1:1
4.1 lnc-CDKL1-1:1
5.0 lnc-CDKL1-1:1
5.1 lnc-RTN1-116:1
5.2 lnc-CDKL1-1:1