Transcript: lnc-CDKL3-2:3

Basic information

LNCipedia transcript ID: lnc-CDKL3-2:3 
LNCipedia gene ID: lnc-CDKL3-2
Ensembl Gene ID: ENSG00000273345
Ensembl Transcript ID: ENST00000520515
Location (hg38): chr5:134205614-134371043
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1744 bp
Exons: 10
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520515.1; ENST00000520515.5
Alternative gene names: ENSG00000273345.1; CTD-2410N18.4; ENSG00000273345.5; AC104109.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 149.4116 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDKL3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDKN2AIPNL-2:2
4.0 lnc-CDKL3-2:3
4.1 lnc-CDKL3-2:3
5.0 lnc-CDKL3-2:3
5.1 lnc-TIFAB-28:3
5.2 lnc-CDKL3-2:3