Transcript: lnc-CDKN2A-1:1

Basic information

LNCipedia transcript ID: lnc-CDKN2A-1:1 
LNCipedia gene ID: lnc-CDKN2A-1
Ensembl Gene ID: ENSG00000265194
Ensembl Transcript ID: ENST00000581788
Location (hg38): chr9:21858910-21861926
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3017 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581788.1; RP11-70L8.4-001; OTTHUMT00000445914.1; NONHSAT130401
Alternative gene names: ENSG00000265194.1; RP11-70L8.4; OTTHUMG00000179356.1; AL359922.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 102.5454 coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDKN2A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDKN2A-1:1
4.0 lnc-CDKN2A-1:1
4.1 lnc-CDKN2A-1:1
5.0 lnc-CDKN2A-1:1
5.1 lnc-FREM1-49:1
5.2 lnc-CDKN2A-1:1