Transcript: lnc-CDKN2B-1:1

Basic information

LNCipedia transcript ID: lnc-CDKN2B-1:1 
LNCipedia gene ID: lnc-CDKN2B-1
Ensembl Gene ID: ENSG00000236921
Ensembl Transcript ID: ENST00000435092
Location (hg38): chr9:22203990-22214672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015797; ENST00000435092; ENST00000435092.1; RP11-408N14.1-001; OTTHUMT00000051934.1; NONHSAT130437
Alternative gene names: XLOC_007657; linc-CDKN2B-1; ENSG00000236921; RP11-408N14.1; ENSG00000236921.1; OTTHUMG00000019692.1; AL157937.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.1892 non-coding 
CPAT coding probability 14.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDKN2B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDKN2B-1:1
3.1 lnc-CDKN2B-1:1
4.0 lnc-CDKN2B-1:1
4.1 lnc-CDKN2B-1:1
5.0 lnc-CDKN2B-1:1
5.1 lnc-FREM1-53:1
5.2 lnc-CDKN2B-1:1