Transcript: lnc-CDR2-1:3

Basic information

LNCipedia transcript ID: lnc-CDR2-1:3 
LNCipedia gene ID: lnc-CDR2-1
Ensembl Gene ID: ENSG00000261113
Ensembl Transcript ID: ENST00000563344
Location (hg38): chr16:22286942-22288732
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 474 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563344.1; RP11-141O15.1-003; OTTHUMT00000430063.1; NONHSAT141054
Alternative gene names: ENSG00000261113.1; RP11-141O15.1; OTTHUMG00000175462.1; AC009034.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.401 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDR2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDR2-1:3
4.0 lnc-CDR2-1:3
4.1 lnc-CDR2-1:3
5.0 lnc-CDR2-1:3
5.1 lnc-SULT1A2-211:3
5.2 lnc-CDR2-1:3