Transcript: lnc-CDR2-2:1

Basic information

LNCipedia transcript ID: lnc-CDR2-2:1 
LNCipedia gene ID: lnc-CDR2-2
Ensembl Gene ID: ENSG00000260973
Ensembl Transcript ID: ENST00000567401
Location (hg38): chr16:22610531-22612196
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1666 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567401.1; RP11-105C19.2-001; OTTHUMT00000434000.1; NONHSAT141085
Alternative gene names: ENSG00000260973.1; RP11-105C19.2; OTTHUMG00000176839.1; AC009021.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.8771 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDR2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDR2-2:1
4.0 lnc-CDR2-2:1
4.1 lnc-CDR2-2:1
5.0 lnc-CDR2-2:1
5.1 lnc-SULT1A2-208:1
5.2 lnc-CDR2-2:1