Transcript: lnc-CDRT15-1:1

Basic information

LNCipedia transcript ID: lnc-CDRT15-1:1 
LNCipedia gene ID: lnc-CDRT15-1
Ensembl Gene ID: ENSG00000262786
Ensembl Transcript ID: ENST00000571192
Location (hg38): chr17:14295512-14297600
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1885 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500420; TCONS_00025210; ENST00000571192.1; RP11-214O1.1-001; OTTHUMT00000439171.1; NONHSAT145763
Alternative gene names: ENSG00000245153; XLOC_012395; linc-CDRT15; AC005224.1; ENSG00000262786.1; RP11-214O1.1; OTTHUMG00000177837.1; AC005224.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5031 non-coding 
CPAT coding probability 13.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDRT15-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDRT15-1:1
3.1 lnc-CDRT15-1:1
4.0 lnc-CDRT15-1:1
4.1 lnc-CDRT15-1:1
5.0 lnc-CDRT15-1:1
5.1 lnc-COPS3-88:1
5.2 lnc-CDRT15-1:1