Transcript: lnc-CDRT15-4:1

Basic information

LNCipedia transcript ID: lnc-CDRT15-4:1 
LNCipedia gene ID: lnc-CDRT15-4
Ensembl Gene ID: ENSG00000233852
Ensembl Transcript ID: ENST00000457609
Location (hg38): chr17:13932720-13940594
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457609; ENST00000457609.1; AC005304.1-001; OTTHUMT00000129988.1; NONHSAT145738
Alternative gene names: ENSG00000233852; AC005304.1; ENSG00000233852.1; OTTHUMG00000058802.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.4682 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDRT15-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDRT15-3:1
3.1 lnc-CDRT15-4:1
4.0 lnc-CDRT15-4:1
4.1 lnc-CDRT15-4:1
5.0 lnc-CDRT15-4:1
5.1 lnc-COPS3-94:1
5.2 lnc-CDRT15-4:1