Transcript: lnc-CDS2-11:1

Basic information

LNCipedia transcript ID: lnc-CDS2-11:1 
LNCipedia gene ID: lnc-CDS2-11
Location (hg38): chr20:5433538-5451040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1474 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_2063_chr20:5414183-5416817_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0089 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDS2-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDS2-11:1
4.0 lnc-CDS2-11:1
4.1 lnc-CDS2-11:1
5.0 lnc-CDS2-11:1
5.1 lnc-PANK2-20:1
5.2 lnc-CDS2-11:1