Transcript: lnc-CDYL-1:2

Basic information

LNCipedia transcript ID: lnc-CDYL-1:2 
LNCipedia gene ID: lnc-CDYL-1
Location (hg38): chr6:4610656-4611304
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000380106; ENST00000380106.2; RP4-529N6.1-001; OTTHUMT00000039731.1
Alternative gene names: ENSG00000205444; RP4-529N6.1; ENSG00000205444.2; OTTHUMG00000014166.1; AL034376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1117.9585 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDYL-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDYL-1:2
3.1 lnc-CDYL-1:2
4.0 lnc-CDYL-1:2
4.1 lnc-CDYL-1:2
5.0 lnc-CDYL-1:2
5.1 lnc-PRPF4B-53:4
5.2 lnc-CDYL-1:2