Transcript: lnc-CDYL2-6:6

Basic information

LNCipedia transcript ID: lnc-CDYL2-6:6 
LNCipedia gene ID: lnc-CDYL2-6
Ensembl Gene ID: ENSG00000259867
Ensembl Transcript ID: ENST00000564411
Location (hg38): chr16:80507569-80540867
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 364 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564411.1; RP11-525K10.3-004; OTTHUMT00000434714.1; NONHSAT143885; ENST00000564411.5
Alternative gene names: ENSG00000259867.1; RP11-525K10.3; OTTHUMG00000177002.1; ENSG00000259867.5; AC105411.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -346.6385 non-coding 
CPAT coding probability 25.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDYL2-6:6 yes no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL2-6:6
4.0 lnc-CDYL2-6:6
4.1 lnc-CDYL2-6:6
5.0 lnc-CDYL2-6:6
5.1 lnc-MAF-11:15
5.2 lnc-CDYL2-6:6