Transcript: lnc-CDYL2-6:8

Basic information

LNCipedia transcript ID: lnc-CDYL2-6:8 
LNCipedia gene ID: lnc-CDYL2-6
RefSeq ID: NR_120307
Location (hg38): chr16:80155958-80563135
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 565 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120307; NR_120307.1
Alternative gene names: LOC102724084


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.867 non-coding 
CPAT coding probability 4.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDYL2-6:8 yes no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL2-6:8
4.0 lnc-CDYL2-6:8
4.1 lnc-CDYL2-6:8
5.0 lnc-CDYL2-6:8
5.1 lnc-MAF-11:2
5.2 lnc-CDYL2-6:8