Transcript: lnc-CELA3A-5:15

Basic information

LNCipedia transcript ID: lnc-CELA3A-5:15 
LNCipedia gene ID: lnc-CELA3A-5
RefSeq ID: NR_109762
Location (hg38): chr1:22025504-22031224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1206 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109762; NR_109762.1
Alternative gene names: HSPC157; LINC00339


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.4288 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CELA3A-5:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CELA3A-1:12
4.0 LINC00339:14
4.1 LINC00339:14
5.0 LINC00339:14
5.1 lnc-ZBTB40-4:15
5.2 lnc-CELA3A-5:15