Transcript: lnc-CELA3A-5:24

Basic information

LNCipedia transcript ID: lnc-CELA3A-5:24 
LNCipedia gene ID: lnc-CELA3A-5
Location (hg38): chr1:22025510-22030619
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000634451.1
Alternative gene names: ENSG00000218510.6; LINC00339; HSPC157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -333.5294 non-coding 
CPAT coding probability 4.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CELA3A-5:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00339:18
4.1 LINC00339:18
5.0 LINC00339:18
5.1 lnc-ZBTB40-4:24
5.2 lnc-CELA3A-5:24