Transcript: lnc-CELA3A-5:30

Basic information

LNCipedia transcript ID: lnc-CELA3A-5:30 
LNCipedia gene ID: lnc-CELA3A-5
Location (hg38): chr1:22025534-22031220
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1045 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000404210; ENST00000404210.2; LINC00339-201
Alternative gene names: ENSG00000218510; NCRNA00339; ENSG00000218510.3; LINC00339; OTTHUMG00000002757.2; HSPC157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.0992 non-coding 
CPAT coding probability 5.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CELA3A-5:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CELA3A-1:3
3.1 lnc-CELA3A-1:3
4.0 LINC00339:24
4.1 LINC00339:24
5.0 LINC00339:24
5.1 lnc-ZBTB40-4:30
5.2 lnc-CELA3A-5:30