Transcript: lnc-CELA3A-5:8

Basic information

LNCipedia transcript ID: lnc-CELA3A-5:8 
LNCipedia gene ID: lnc-CELA3A-5
Location (hg38): chr1:22025498-22030619
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 788 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000634712.1
Alternative gene names: ENSG00000218510.6; LINC00339; HSPC157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -246.143 non-coding 
CPAT coding probability 4.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CELA3A-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00339:7
4.1 LINC00339:7
5.0 LINC00339:7
5.1 lnc-ZBTB40-4:8
5.2 lnc-CELA3A-5:8