Transcript: lnc-CEMP1-1:1

Basic information

LNCipedia transcript ID: lnc-CEMP1-1:1 
LNCipedia gene ID: lnc-CEMP1-1
Location (hg38): chr16:2554068-2566294
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 9768 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000562485.1; RP11-20I23.8-001; OTTHUMT00000435692.2; NONHSAT052139
Alternative gene names: ENSG00000261613.1; RP11-20I23.8; OTTHUMG00000177162.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 203.2404 coding 
CPAT coding probability 53.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEMP1-1:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-1:1
4.0 lnc-CEMP1-1:1
4.1 lnc-CEMP1-1:1
5.0 lnc-CEMP1-1:1
5.1 lnc-PKMYT1-38:3
5.2 lnc-CEMP1-1:1