Transcript: lnc-CEMP1-1:2

Basic information

LNCipedia transcript ID: lnc-CEMP1-1:2 
LNCipedia gene ID: lnc-CEMP1-1
Ensembl Gene ID: ENSG00000269937
Ensembl Transcript ID: ENST00000569852
Location (hg38): chr16:2561471-2565096
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3626 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569852.1; RP11-20I23.8-002; OTTHUMT00000435691.1; NONHSAT147786
Alternative gene names: ENSG00000261613.1; RP11-20I23.8; OTTHUMG00000177162.2; ENSG00000269937.1; AC093525.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.7226 non-coding 
CPAT coding probability 56.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEMP1-1:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-1:2
4.0 lnc-CEMP1-1:2
4.1 lnc-CEMP1-1:2
5.0 lnc-CEMP1-1:2
5.1 lnc-PKMYT1-38:4
5.2 lnc-CEMP1-1:2