Transcript: lnc-CEMP1-1:3

Basic information

LNCipedia transcript ID: lnc-CEMP1-1:3 
LNCipedia gene ID: lnc-CEMP1-1
Location (hg38): chr16:2554060-2556538
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1859 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000563449.1; RP11-20I23.8-003; OTTHUMT00000435688.1; NONHSAT052138
Alternative gene names: ENSG00000261613.1; RP11-20I23.8; OTTHUMG00000177162.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3724 non-coding 
CPAT coding probability 16.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-1:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-1:3
4.0 lnc-CEMP1-1:3
4.1 lnc-CEMP1-1:3
5.0 lnc-CEMP1-1:3
5.1 lnc-PKMYT1-38:6
5.2 lnc-CEMP1-1:3