Transcript: lnc-CEMP1-1:5

Basic information

LNCipedia transcript ID: lnc-CEMP1-1:5 
LNCipedia gene ID: lnc-CEMP1-1
Ensembl Gene ID: ENSG00000261140
Ensembl Transcript ID: ENST00000562232
Location (hg38): chr16:2569043-2571936
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 459 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562232.1; RP11-20I23.6-001; OTTHUMT00000435693.1; NONHSAT147791
Alternative gene names: ENSG00000261140.1; RP11-20I23.6; OTTHUMG00000177163.1; AC093525.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8972 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-1:5 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-2:1
4.0 lnc-CEMP1-1:5
4.1 lnc-CEMP1-1:5
5.0 lnc-CEMP1-1:5
5.1 lnc-PKMYT1-38:1
5.2 lnc-CEMP1-1:5