Transcript: lnc-CEMP1-1:6

Basic information

LNCipedia transcript ID: lnc-CEMP1-1:6 
LNCipedia gene ID: lnc-CEMP1-1
Location (hg38): chr16:2558032-2571361
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 13330 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA508:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 203.2404 coding 
CPAT coding probability 43.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEMP1-1:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CEMP1-1:6
4.1 lnc-CEMP1-1:6
5.0 lnc-CEMP1-1:6
5.1 lnc-PKMYT1-38:2
5.2 lnc-CEMP1-1:6