Transcript: lnc-CEMP1-5:1

Basic information

LNCipedia transcript ID: lnc-CEMP1-5:1 
LNCipedia gene ID: lnc-CEMP1-5
Ensembl Gene ID: ENSG00000261093
Ensembl Transcript ID: ENST00000562166
Location (hg38): chr16:2597881-2599718
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1838 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562166.1; CTD-3126B10.1-001; OTTHUMT00000435703.1; NONHSAT147795
Alternative gene names: ENSG00000261093.1; CTD-3126B10.1; OTTHUMG00000177171.1; AC141586.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.2333 non-coding 
CPAT coding probability 6.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-5:1
4.0 lnc-CEMP1-5:1
4.1 lnc-CEMP1-5:1
5.0 lnc-CEMP1-5:1
5.1 lnc-PKMYT1-34:1
5.2 lnc-CEMP1-5:1