Transcript: lnc-CEMP1-6:3

Basic information

LNCipedia transcript ID: lnc-CEMP1-6:3 
LNCipedia gene ID: lnc-CEMP1-6
Ensembl Gene ID: ENSG00000260874
Ensembl Transcript ID: ENST00000566085
Location (hg38): chr16:2456252-2459966
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 789 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052111; ENST00000566085.1; ENST00000566085.5
Alternative gene names: ENSG00000260874.1; RP11-715J22.4; ENSG00000260874.5; AC106820.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.9912 non-coding 
CPAT coding probability 18.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-6:3
4.0 lnc-CEMP1-6:3
4.1 lnc-CEMP1-6:3
5.0 lnc-CEMP1-6:3
5.1 lnc-PKMYT1-42:3
5.2 lnc-CEMP1-6:3