Transcript: lnc-CEMP1-7:1

Basic information

LNCipedia transcript ID: lnc-CEMP1-7:1 
LNCipedia gene ID: lnc-CEMP1-7
Ensembl Gene ID: ENSG00000260095
Ensembl Transcript ID: ENST00000561653
Location (hg38): chr16:2452581-2452977
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561653.1; RP11-715J22.3-001; OTTHUMT00000435100.1; NONHSAT052109
Alternative gene names: ENSG00000260095.1; RP11-715J22.3; OTTHUMG00000177048.1; AC106820.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.5331 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-7:1
4.0 lnc-CEMP1-7:1
4.1 lnc-CEMP1-7:1
5.0 lnc-CEMP1-7:1
5.1 lnc-PKMYT1-43:1
5.2 lnc-CEMP1-7:1