Transcript: lnc-CENPBD1-3:7

Basic information

LNCipedia transcript ID: lnc-CENPBD1-3:7 
LNCipedia gene ID: lnc-CENPBD1-3
Ensembl Gene ID: ENSG00000259006
Ensembl Transcript ID: ENST00000554623
Location (hg38): chr16:89919827-89922662
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 985 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554623.1; RP11-566K11.4-001; OTTHUMT00000412015.1; NONHSAT144602
Alternative gene names: ENSG00000259006.1; RP11-566K11.4; OTTHUMG00000171164.1; AC092143.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.5691 non-coding 
CPAT coding probability 58.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CENPBD1-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CENPBD1-1:1
4.0 lnc-CENPBD1-1:1
4.1 lnc-CENPBD1-2:9
5.0 lnc-CENPBD1-2:9
5.1 lnc-KLHDC4-66:7
5.2 lnc-CENPBD1-3:7