Transcript: lnc-CENPC-1:8

Basic information

LNCipedia transcript ID: lnc-CENPC-1:8 
LNCipedia gene ID: lnc-CENPC-1
Ensembl Gene ID: ENSG00000250075
Ensembl Transcript ID: ENST00000503987
Location (hg38): chr4:67418542-67421054
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 763 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503987; ENST00000503987.1; RP11-584P21.2-004; OTTHUMT00000362004.1; NONHSAT096682
Alternative gene names: ENSG00000250075; RP11-584P21.2; ENSG00000250075.1; OTTHUMG00000160726.3; ENSG00000250075.5; AC104806.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.9188 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CENPC-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CENPC1-1:3
3.1 lnc-CENPC1-1:3
4.0 lnc-CENPC1-1:3
4.1 lnc-CENPC1-1:3
5.0 lnc-CENPC1-1:3
5.1 lnc-CENPC-1:4
5.2 lnc-CENPC-1:8