Transcript: lnc-CENPM-1:1

Basic information

LNCipedia transcript ID: lnc-CENPM-1:1 
LNCipedia gene ID: lnc-CENPM-1
Ensembl Gene ID: ENSG00000224883
Ensembl Transcript ID: ENST00000424613
Location (hg38): chr22:41981304-41982217
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 515 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424613.1; CTA-250D10.19-001; OTTHUMT00000322050.1; NONHSAT087005
Alternative gene names: ENSG00000224883.1; CTA-250D10.19; OTTHUMG00000151275.1; Z99716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 165.1915 coding 
CPAT coding probability 40.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CENPM-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CENPM-1:1
4.0 lnc-CENPM-1:1
4.1 lnc-CENPM-1:1
5.0 lnc-CENPM-1:1
5.1 lnc-CENPM-1:1
5.2 lnc-CENPM-1:1