Transcript: lnc-CENPP-20:25

Basic information

LNCipedia transcript ID: lnc-CENPP-20:25 
LNCipedia gene ID: lnc-CENPP-20
RefSeq ID: NR_027341
Location (hg38): chr9:92141467-92159608
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2000 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000416438; ENST00000416438.1; LINC00475-003; OTTHUMT00000053051.1; NR_027341; NR_027341.1
Alternative gene names: ENSG00000225511; C9orf44; ENSG00000225511.1; LINC00475; OTTHUMG00000020216.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.0402 non-coding 
CPAT coding probability 10.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CENPP-20:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CENPP-3:4
3.1 lnc-CENPP-3:4
4.0 LINC00475:5
4.1 LINC00475:5
5.0 LINC00475:5
5.1 lnc-FAM120A-50:25
5.2 lnc-CENPP-20:25