Transcript: lnc-CENPP-2:1

Basic information

LNCipedia transcript ID: lnc-CENPP-2:1 
LNCipedia gene ID: lnc-CENPP-2
Ensembl Gene ID: ENSG00000236115
Ensembl Transcript ID: ENST00000457003
Location (hg38): chr9:92205356-92210158
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 333 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015716; ENST00000457003.1; RP11-62C3.6-001; OTTHUMT00000053084.1; NONHSAT133181
Alternative gene names: XLOC_007460; linc-CENPP-2; ENSG00000236115.1; RP11-62C3.6; OTTHUMG00000020222.1; AL136097.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.1355 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CENPP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CENPP-2:1
3.1 lnc-CENPP-2:1
4.0 lnc-CENPP-2:1
4.1 lnc-CENPP-2:1
5.0 lnc-CENPP-2:1
5.1 lnc-FAM120A-46:1
5.2 lnc-CENPP-2:1