Transcript: lnc-CENPS-CORT-1:2

Basic information

LNCipedia transcript ID: lnc-CENPS-CORT-1:2 
LNCipedia gene ID: lnc-CENPS-CORT-1
Ensembl Gene ID: ENSG00000203469
Ensembl Transcript ID: ENST00000424487
Location (hg38): chr1:10458555-10459338
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000152; ENST00000424487.1; RP5-1113E3.3-001; OTTHUMT00000005413.1; NONHSAT000858
Alternative gene names: XLOC_000048; linc-PEX14; ENSG00000203469.2; RP5-1113E3.3; OTTHUMG00000001907.1; AL354956.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.276 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CENPS-CORT-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APITD1-CORT-1:2
3.1 lnc-APITD1-1:2
4.0 lnc-APITD1-CORT-1:2
4.1 lnc-APITD1-CORT-1:2
5.0 lnc-APITD1-CORT-1:2
5.1 lnc-KIF1B-6:2
5.2 lnc-CENPS-CORT-1:2