Transcript: lnc-CEP170-13:6

Basic information

LNCipedia transcript ID: lnc-CEP170-13:6 
LNCipedia gene ID: lnc-CEP170-13
Location (hg38): chr1:243095991-243097587
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000411733.1; RP11-261C10.3-008; OTTHUMT00000096170.1; NONHSAT010594
Alternative gene names: ENSG00000214837.3; RP11-261C10.3; OTTHUMG00000039861.3; ENSG00000214837.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.1002 non-coding 
CPAT coding probability 10.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP170-13:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEP170-1:4
4.0 LINC01347:5
4.1 LINC01347:5
5.0 LINC01347:5
5.1 lnc-CHML-19:6
5.2 lnc-CEP170-13:6