Transcript: lnc-CEP170-2:2

Basic information

LNCipedia transcript ID: lnc-CEP170-2:2 
LNCipedia gene ID: lnc-CEP170-2
Location (hg38): chr1:243038914-243048524
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 823 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000450226; ENST00000450226.1; RP11-261C10.2-003; OTTHUMT00000096161.1; NONHSAT010579
Alternative gene names: ENSG00000231512; RP11-261C10.2; ENSG00000231512.1; OTTHUMG00000039860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6581 non-coding 
CPAT coding probability 14.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP170-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP170-1:2
3.1 lnc-CEP170-2:2
4.0 lnc-CEP170-2:2
4.1 lnc-CEP170-2:2
5.0 lnc-CEP170-2:2
5.1 lnc-CHML-18:2
5.2 lnc-CEP170-2:2