Transcript: lnc-CEP170-3:1

Basic information

LNCipedia transcript ID: lnc-CEP170-3:1 
LNCipedia gene ID: lnc-CEP170-3
Ensembl Gene ID: ENSG00000234116
Ensembl Transcript ID: ENST00000427176
Location (hg38): chr1:243005845-243007468
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000772; ENST00000427176; ENST00000427176.1; RP11-261C10.1-001; OTTHUMT00000096158.1; NONHSAT010576
Alternative gene names: XLOC_001282; linc-PLD5-3; ENSG00000234116; RP11-261C10.1; ENSG00000234116.1; OTTHUMG00000039859.1; AL606534.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.2676 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP170-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP170-2:1
3.1 lnc-CEP170-3:1
4.0 lnc-CEP170-3:1
4.1 lnc-CEP170-3:1
5.0 lnc-CEP170-3:1
5.1 lnc-CHML-17:1
5.2 lnc-CEP170-3:1