Transcript: lnc-CEP83-22:2

Basic information

LNCipedia transcript ID: lnc-CEP83-22:2 
LNCipedia gene ID: lnc-CEP83-22
Ensembl Gene ID: ENSG00000257283
Ensembl Transcript ID: ENST00000550687
Location (hg38): chr12:93894965-93943603
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550687.1; RP11-1060G2.1-001; OTTHUMT00000408523.1; NONHSAT029970
Alternative gene names: ENSG00000257283.1; RP11-1060G2.1; OTTHUMG00000170326.1; AC012464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.0564 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP83-22:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1105G2.3.1-3:1
4.0 lnc-RP11-1105G2.3.1-3:1
4.1 lnc-RP11-1105G2.3.1-3:1
5.0 lnc-RP11-1105G2.3.1-3:1
5.1 lnc-EEA1-22:2
5.2 lnc-CEP83-22:2