Transcript: lnc-CERK-18:1

Basic information

LNCipedia transcript ID: lnc-CERK-18:1 
LNCipedia gene ID: lnc-CERK-18
Ensembl Gene ID: ENSG00000235154
Ensembl Transcript ID: ENST00000457518
Location (hg38): chr22:48044710-48048549
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029492; ENST00000457518; ENST00000457518.1; CTA-280A3__B.2-001; OTTHUMT00000317555.1; NONHSAT087366
Alternative gene names: XLOC_014407; linc-CERK-6; ENSG00000235154; CTA-280A3__B.2; ENSG00000235154.1; OTTHUMG00000150320.1; FP325330.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -496.9278 non-coding 
CPAT coding probability 17.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CERK-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTA-299D3.8.1-3:1
3.1 lnc-CTA-299D3.8.1-3:1
4.0 lnc-CTA-299D3.8.1-3:1
4.1 lnc-CTA-299D3.8.1-3:1
5.0 lnc-CTA-299D3.8.1-3:1
5.1 lnc-CERK-11:1
5.2 lnc-CERK-18:1