Transcript: lnc-CFAP52-1:2

Basic information

LNCipedia transcript ID: lnc-CFAP52-1:2 
LNCipedia gene ID: lnc-CFAP52-1
Ensembl Gene ID: ENSG00000263051
Ensembl Transcript ID: ENST00000574460
Location (hg38): chr17:9547298-9548541
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 235 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574460.1; RP11-565F19.3-001; OTTHUMT00000440119.1; NONHSAT145592
Alternative gene names: ENSG00000263051.1; RP11-565F19.3; OTTHUMG00000177985.1; AC087501.4; AC087501.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.3933 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP52-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR16-1:1
4.0 lnc-WDR16-1:1
4.1 lnc-WDR16-1:1
5.0 lnc-WDR16-1:1
5.1 lnc-CFAP52-1:1
5.2 lnc-CFAP52-1:2