Transcript: lnc-CHAD-1:1

Basic information

LNCipedia transcript ID: lnc-CHAD-1:1 
LNCipedia gene ID: lnc-CHAD-1
Location (hg38): chr17:50475819-50478391
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2525 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000507161.1; RP11-94C24.3-001; OTTHUMT00000367422.1; NONHSAT054679
Alternative gene names: ENSG00000248380.1; RP11-94C24.3; OTTHUMG00000162127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.6634 non-coding 
CPAT coding probability 25.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHAD-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHAD-1:1
4.0 lnc-CHAD-1:1
4.1 lnc-CHAD-1:1
5.0 lnc-CHAD-1:1
5.1 lnc-CHAD-1:1
5.2 lnc-CHAD-1:1