Transcript: lnc-CHAD-2:1

Basic information

LNCipedia transcript ID: lnc-CHAD-2:1 
LNCipedia gene ID: lnc-CHAD-2
Ensembl Gene ID: ENSG00000249451
Ensembl Transcript ID: ENST00000502300
Location (hg38): chr17:50503412-50508328
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 349 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025238; ENST00000502300.1; RP11-94C24.6-001; OTTHUMT00000367595.1; NONHSAT054684
Alternative gene names: XLOC_012517; linc-CHAD-2; ENSG00000249451.1; RP11-94C24.6; OTTHUMG00000162156.1; AC021491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.8763 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHAD-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHAD-1:1
3.1 lnc-CHAD-2:1
4.0 lnc-CHAD-2:1
4.1 lnc-CHAD-2:1
5.0 lnc-CHAD-2:1
5.1 lnc-CHAD-2:1
5.2 lnc-CHAD-2:1