Transcript: lnc-CHD1-221:1

Basic information

LNCipedia transcript ID: lnc-CHD1-221:1 
LNCipedia gene ID: lnc-CHD1-221
Ensembl Gene ID: ENSG00000279232
Ensembl Transcript ID: ENST00000624710
Location (hg38): chr5:98792863-98795766
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2904 bp
Exons: 1
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624710.1
Alternative gene names: ENSG00000279232.2; AC008522.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 537.09 coding 
CPAT coding probability 82.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHD1-221:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-ANKRD34B-221:1
5.1 lnc-ANKRD34B-221:1
5.2 lnc-CHD1-221:1